Meta-genomics workshop with Amadea Biopack at Gen2Bio
In the frame of a collaboration between the GenOuest platform and Isoft, a new bio-informatics application of Amadea Biopack will be presented

March 31th 2009 - La Baule- Palais des congrès Atlantia

At the Gen2Bio annual symposium of western France life science researchers (La Baule), the GenOuest Platform and ISoft will present a new example application of Amadea Biopack to meta-genomics, in the frame of a cooperation aiming to integrate the different data types and tools available in the Ouest Genopole platforms.

Problématics of the demonstration

Data :
High-throughput sequencing meta-genomics Experimental results
Goal :
Detect fungi sequences and statistics on detected species

Process main principles

  • Connection to high-throuhput sequencing data
  • Blast against fungi genomes
  • Neighbour hits clustering
  • Conut hts clusters per species and species families, using the taxonomy data source
  • Select fungi-specific genes
    • Select hits located in a gene and search homologs using teh Uniref database
    • Use the taxonomy data source to keep only fungi-specific sequences
    • Identify the species family with the highest number of in-gene sequences
  • Link with a table providing information about fungi phenotypes (identify water fungi)


 
Back to HOME Back to HOME